Metadata¶
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class
pronto.
Metadata
[source]¶ A mapping containing metadata about the current ontology.
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format_version
¶ The OBO format version of the referenced ontology. 1.4 is the default since
pronto
can only parse and write OBO documents of that format version.- Type
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data_version
¶ The OBO data version of the ontology, which is then expanded to the
versionIRI
if translated to OWL.
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ontology
¶ The identifier of the ontology, either as a short OBO identifier or as a full IRI.
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default_namespace
¶ The default namespace to use for entity frames lacking a
namespace
clause.
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namespace_id_rule
¶ The production rule for identifiers in the current ontology document. soft-deprecated, used mostly by OBO-Edit or other outdated tools.
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owl_axioms
¶ A list of OWL axioms that cannot be expressed in OBO language, serialized in OWL2 Functional syntax.
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imports
¶ A set of references to other ontologies that are imported by the current ontology. OBO requires all entities referenced in the file to be reachable through imports (excluding databases cross-references).
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synonymtypedefs
¶ A set of user-defined synonym types including a description and an optional scope.
- Type
set
ofSynonymType
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idspaces
¶ A mapping between a local ID space and a global ID space, with an optional description of the mapping.
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remarks
¶ A set of general comments for this file, which will be preserved by a parser/serializer as opposed to inline comments using
!
.
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annotations
¶ A set of annotations relevant to the whole file. OBO property-values are semantically equivalent to
owl:AnnotationProperty
in OWL2.- Type
set
ofPropertyValue
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unreserved
¶ A mapping of unreserved tags to values found in the ontology header.
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__eq__
()¶ Return self==value.
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__ge__
()¶ Return self>=value.
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__gt__
()¶ Return self>value.
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__hash__
()¶ Return hash(self).
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__le__
()¶ Return self<=value.
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__lt__
()¶ Return self<value.
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__repr__
()¶ Return repr(self).
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