Metadata¶

class pronto.Metadata[source]¶

A mapping containing metadata about the current ontology.

format_version¶

The OBO format version of the referenced ontology. 1.4 is the default since pronto can only parse and write OBO documents of that format version.

Type: str

data_version¶

The OBO data version of the ontology, which is then expanded to the versionIRI if translated to OWL.

Type: str or None

ontology¶

The identifier of the ontology, either as a short OBO identifier or as a full IRI.

Type: str or None

date¶

The date the ontology was last modified, if any.

Type: datetime or None

default_namespace¶

The default namespace to use for entity frames lacking a namespace clause.

Type: str or None

namespace_id_rule¶

The production rule for identifiers in the current ontology document. soft-deprecated, used mostly by OBO-Edit or other outdated tools.

Type: str or None

owl_axioms¶

A list of OWL axioms that cannot be expressed in OBO language, serialized in OWL2 Functional syntax.

Type: list of str

saved_by¶

The name of the person that last saved the ontology file.

Type: str or None

auto_generated_by¶

The name of the software that was used to generate the file.

Type: str or None

subsetdefs¶

A set of ontology subsets declared in the ontology files.

Type: set of str

imports¶

A set of references to other ontologies that are imported by the current ontology. OBO requires all entities referenced in the file to be reachable through imports (excluding databases cross-references).

Type: set of str

synonymtypedefs¶

A set of user-defined synonym types including a description and an optional scope.

Type: set of SynonymType

idspaces¶

A mapping between a local ID space and a global ID space, with an optional description of the mapping.

Type: dict of str to couple of str

remarks¶

A set of general comments for this file, which will be preserved by a parser/serializer as opposed to inline comments using !.

Type: set of str

annotations¶

A set of annotations relevant to the whole file. OBO property-values are semantically equivalent to owl:AnnotationProperty in OWL2.

Type: set of PropertyValue

unreserved¶

A mapping of unreserved tags to values found in the ontology header.

Type: dict of str to set of str

__eq__()¶: Return self==value.

__ge__()¶: Return self>=value.

__gt__()¶: Return self>value.

__hash__()¶: Return hash(self).

__le__()¶: Return self<=value.

__lt__()¶: Return self<value.

__repr__()¶: Return repr(self).

__bool__() → bool[source]¶: Return False if the instance does not contain any metadata.