``pronto`` |Stars| ================== .. |Stars| image:: https://img.shields.io/github/stars/althonos/pronto.svg?style=social&maxAge=3600&label=Star :target: https://github.com/althonos/pronto/stargazers *A Python frontend to ontologies.* |TravisCI| |License| |Source| |Docs| |Coverage| |Sanity| |PyPI| |Bioconda| |Versions| |Wheel| |Changelog| |Issues| |DOI| |Downloads| .. |TravisCI| image:: https://img.shields.io/travis/althonos/pronto/master.svg?&maxAge=600&style=flat-square :target: https://travis-ci.org/althonos/pronto/branches .. |License| image:: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square&maxAge=2678400 :target: https://choosealicense.com/licenses/mit/ .. |Source| image:: https://img.shields.io/badge/source-GitHub-303030.svg?maxAge=2678400&style=flat-square :target: https://github.com/althonos/pronto/ .. |Docs| image:: https://img.shields.io/readthedocs/pronto?style=flat-square&maxAge=3600 :target: http://pronto.readthedocs.io/en/latest/?badge=latest .. |Coverage| image:: https://img.shields.io/codecov/c/gh/althonos/pronto?style=flat-square&maxAge=3600 :target: https://www.codecov.com/gh/althonos/pronto/ .. |Sanity| image:: https://img.shields.io/codacy/grade/157b5fd24e5648ea80580f28399e79a4.svg?style=flat-square&maxAge=3600 :target: https://codacy.com/app/althonos/pronto .. |PyPI| image:: https://img.shields.io/pypi/v/pronto.svg?style=flat-square&maxAge=3600 :target: https://pypi.python.org/pypi/pronto .. |Bioconda| image:: https://img.shields.io/conda/vn/bioconda/pronto?style=flat-square&maxAge=3600 :target: https://anaconda.org/bioconda/pronto .. |Versions| image:: https://img.shields.io/pypi/pyversions/pronto.svg?style=flat-square&maxAge=3600 :target: https://pypi.org/project/pronto/#files .. |Wheel| image:: https://img.shields.io/pypi/wheel/pronto?style=flat-square&maxAge=3600 :target: https://pypi.org/project/pronto/#files .. |Changelog| image:: https://img.shields.io/badge/keep%20a-changelog-8A0707.svg?maxAge=2678400&style=flat-square :target: https://github.com/althonos/pronto/blob/master/CHANGELOG.md .. |Issues| image:: https://img.shields.io/github/issues/althonos/pronto.svg?style=flat-square&maxAge=600 :target: https://github.com/althonos/pronto/issues .. |DOI| image:: https://img.shields.io/badge/doi-10.5281%2Fzenodo.595572-green?style=flat-square&maxAge=2678400 :target: https://doi.org/10.5281/zenodo.595572 .. |Downloads| image:: https://img.shields.io/badge/dynamic/json?style=flat-square&color=303f9f&maxAge=86400&label=downloads&query=%24.total_downloads&url=https%3A%2F%2Fapi.pepy.tech%2Fapi%2Fprojects%2Fpronto :target: https://pepy.tech/project/pronto ``pronto`` is a Python agnostic library designed to work with ontologies. At the moment, it can parse `OBO`_, `OBO Graphs`_ or `OWL in RDF/XML format `_, ntologies on the local host or from an network location, and export ontologies to `OBO`_ or `OBO Graphs`_ (in `JSON`_ format). .. _OBO: https://owlcollab.github.io/oboformat/doc/GO.format.obo-1_4.html .. _OBO Graphs: https://github.com/geneontology/obographs .. _JSON: http://www.json.org/ Setup ----- Run ``pip install pronto`` in a shell to download the latest release and all its dependencies from PyPi, or have a look at the :doc:`Installation page ` to find other ways to install ``pronto``. .. note:: ``pronto`` requires ``fastobo``, an efficient and faultless parser for the OBO language implemented in Rust. Most platforms, such as Linux x86-64, OSX and Windows x86-64 provide precompiled packages, but other less frequent platforms will require a working Rust toolchain. See the ``fastobo`` `Installation page `_ and the `Rust Forge tutorial `_ for more information about this topic. Library ------- .. toctree:: :maxdepth: 2 Installation Examples API Reference To-do Changelog About Indices and tables ================== * :ref:`genindex` * :ref:`search`